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(1984). A lacuna do contorno: Teoria das catastrofes e fenomenologia. Análise 1, pp. 101-139.

(1985). Morphogenèse du sens, Presses Universitaires de France, Paris.

(1989)., Le tournant morphologique de l'objectivité et de la cognition, in W. Koch (éd), The nature of culture, Bochum, Brockmeyer, pp. 357-367.

(1989). On the linguistic import of catastrophe theory. Semiotica 74, pp. 179-219.

(1989)., Structuralisme et phénoménologie: la théorie des catastrophes et la part maudite de la raison, in J. Petitot (éd), Logos et théorie des catastrophes. A partir de l'œuvre de René Thom, Genève, Patino, pp. 345-376.

(ed) (1989). Logos et théorie des catastrophes. A partir de l'œuvre de René Thom: . Actes du colloque international de 1982, Patino, Genève.

with Coquet, J.-C. (eds) (1991). L'objet. Langages 103.

(1992)., Actuality of transcendental æsthetics for modern physics, in L. Boi, D. Flament & J. Salanskis (eds.), 1830–1930: a century of geometry, Dordrecht, Springer, pp. 273-304.

(1992). Physique du sens: de la théorie des singularités aux structures sémio-narratives, CNRS, Paris.

(1995). La réorientation naturaliste de la phénoménologie. Archives de philosophie 58 (4), pp. 631-658.

(1995). Sciences Cognitives et Phénoménologie. Archives de philosophie 58 (4), pp. 529-631.

with Smith, B. (1996)., Physics and the phenomenal world, in R. Poli & P. Simons (eds.), Formal ontology, Dordrecht, Springer, pp. 233-253.

(1999)., Morphological eidetics for a phenomenology of perception, in J. Petitot, F. Varela, B. Pachoud & J. Roy (eds.), Naturalizing phenomenology, Stanford, Stanford University Press, pp. n/a.

with Varela, F. , Pachoud, B. , Roy, J.-M. (1999)., Beyond the gap: An introduction to naturalizing phenomenology, in J. Petitot, F. Varela, B. Pachoud & J. Roy (eds.), Naturalizing phenomenology, Stanford, Stanford University Press, pp. 1-83.

(ed) (1999). La généalogie morphologique du structuralisme. Critique 620-621.

with Varela, F. , Pachoud, B. , Roy, J.-M. (eds) (1999). Naturalizing phenomenology: Issues in contemporary phenomenology and cognitive science, Stanford University Press, Stanford.

(2000)., Morphological eidetics for a phenomenology of perception, in J. Petitot, F. Varela, B. Pachoud & J. Roy (eds.), Naturalizing phenomenology, Stanford, Stanford University Press, pp. n/a.

(2000)., Sheaf mereology and space cognition, in A. Carsetti (ed.), Functional models of cognition, Dordrecht, Springer, pp. 233-252.

(2002)., Mathematical physics and formalized epistermology: debate with Jean Petitot, in M. Mugur Schchter (ed.), Quantum mechanics, mathematics, cognition and action, Dordrecht, Springer, pp. 73-102.

(2002)., Mathematical physics and formalized epistermology: debate with Jean Petitot, in M. Mugur Schchter (ed.), Quantum mechanics, mathematics, cognition and action, Dordrecht, Springer, pp. 73-102.

with Varela, F. , Pachoud, B. , Roy, J.-M. (eds) (2002). Naturaliser la phénoménologie: Essais sur la phénoménologie contemporaine et les sciences cognitives, CNRS, Paris.

(2003). Neurogeometry of V1 and Kanizsa contours. Axiomathes 13 (3-4), pp. 347-363.

(2004)., Functional architecture of the visual cortex and variational models for Kanizsa's modal subjective contours, in A. Carsetti (ed.), Seeing, thinking and knowing, Dordrecht, Springer, pp. 55-69.

(2004). Morphologie et esthétique, Maisonneuve, Paris.

with Bitbol, M. , Kerszberg, P. (2009)., Introduction, in M. Bitbol, P. Kerszberg & J. Petitot (eds.), Constituting objectivity, Dordrecht, Springer, pp. 1-30.

(2009)., Morphology and structural aesthetics: from Goethe to Lévi-Strauss, in B. Wiseman (ed.), The Cambridge Companion to Lévi-Strauss, Cambridge, Cambridge University Press, pp. 275-295.

(2009)., Noncommutative geometry and transcendental physics, in M. Bitbol, P. Kerszberg & J. Petitot (eds.), Constituting objectivity, Dordrecht, Springer, pp. 415-455.

with Bitbol, M. , Kerszberg, P. (eds) (2009). Constituting objectivity: transcendental perspectives on modern physics, Springer, Dordrecht.

(2014)., Landmarks for neurogeometry, in G. Citti & A. Sarti (eds.), Neuromathematics of vision, Dordrecht, Springer, pp. 1-85.

(2017). Elements of neurogeometry: functional architectures of vision, Springer, Dordrecht.

(2017). Mémoires et parcours sémiotiques du côté de Greimas. Actes sémiotiques 120, pp. [en ligne].

(2018)., The formalization of elementary semiotic structures, in D. Compagno (ed.), Quantitative semiotic analysis, Dordrecht, Springer, pp. 33-54.